PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539818.1_FGP006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 876aa    MW: 96035.9 Da    PI: 5.3546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539818.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.2e-10614635526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f+++G C +Gd+CkF+H+
  KN539818.1_FGP006 614 PCHNFMENGMCIRGDKCKFSHV 635
                        7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-4333IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5010311.676584608IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5585609IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019585610IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455609637IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018612636IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6613636IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7614635IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4614634IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MQGFRKVTPD RWEFANEAFL AGQKHLLKNI KRRRVSKPLM DSQLRNKTSV VFGQPEAPGE  60
VVSLKRDRAA LRAEVIMLKQ QYNACKSQLI AMEEMVRNIE RRQQQTISFF AKVLTNPVFV  120
QQVLLNYVNK SALRGTAKRQ RLMENEEQHA DSPLNKGMEA ASVMEADVSL GSTGCGTVGK  180
VETTPMCNSQ NIENMCDDVW EELDALPETG MEQEDKAGIG SFDVEEFVGR PCDVGGDRGK  240
NLEVEVALGN HAPHETPSTS ASPDAAVNPT TDPGVVPQGT EEGRVAGVER VEGVEEDVFA  300
GGTSGEADAD GDELGTGAGL MGDDEALRSM QACLDGEDSE LVIEMVGNDD EQLQLDAMMN  360
NLSGLIDDAS ACVMSAQSCG VSGDKLQSDD RVAEEVKELG AGIGNDRSVC SLDHGSLDGG  420
GGFEEGEIEG DTQNLDADDS GNSELQDDVE LEEDFDSGRI EEDGSCGHDV KSNLHLIPQK  480
GNGNTARNML CNSKGDSQMH VARAQAVSYD EVLDWNETPL PDDKALKHGN TRKRTLTEER  540
KAKKTKTKRI KRALQREAEG VKRLKLQPVI KPKVVKVCHF YLHGKCQQPC THYARGSCLK  600
GDDCPYDHEL SKYPCHNFME NGMCIRGDKC KFSHVIPTAE GPSTPDAKKS NVSSVPEKAN  660
CQEQTSRQKI STVYSGEPAT SVPIKHHSIL KNLAGISGNA QKDVVSTEKH KNPTGGPHQN  720
FGRPQPADGK KLGKHNGHRS APLLDEKDSS KQANLHPCSE PKKNSLPTTA AVPSSHTWML  780
FSDEPVPMRL CSIFCIPHTS FIAVTSSCKL QLLMWTYFAE LGANIYCQIL KIGNYQMNAL  840
LFNPQVLSMF LNKDLNWKVG VYLFVWDYEN AKRHMT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632LKNIKRR
23034KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622402.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_015622403.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0D3EQD00.0A0A0D3EQD0_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g39100.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-34heat shock transcription factor A2